rna-seq plugins

The directory indexes 5 plugins tagged “rna-seq” from 3 public source repositories, with 195 skills and 4 MCP servers across the collection.

5 plugins3 repositories0 cross-runtimeIndexing methodology →

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tooluniverse
by Shanghua Gao
1000+ scientific research tools for biology, chemistry, medicine, and data science. Access PubMed, UniProt, PubChem, TCGA, NHANES, GWAS Catalog, and hundreds more databases through a unified MCP interface. Includes specialized research skills for genomics, drug discovery, clinical analysis, protein variant interpretation, and more.
Codex50 Skills1 MCP serverstdio
1.7kUpdated 2 days ago
tooluniverse
by Shanghua Gao
1000+ scientific research tools for biology, chemistry, medicine, and data science. Access PubMed, UniProt, PubChem, TCGA, NHANES, GWAS Catalog, and hundreds more databases through a unified MCP interface. Includes 120+ specialized research skills for genomics, drug discovery, clinical analysis, protein variant interpretation, and more.
Claude Code50 Skills1 MCP serverstdio
1.7kUpdated 2 days ago
encode-toolkit
by Dr. Alex M. Mawla, PhD
20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.
Claude Code46 Skills1 MCP serverstdio
20Updated 3 days ago
encode-toolkit
by Dr. Alex M. Mawla, PhD
20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.
Claude Code46 Skills1 MCP serverstdio
20Updated 3 days ago
bioinformatics-engineering
by Matt Corbett
Bioinformatics & genomics-pipeline team — agents (bioinformatics-workflow-architect, genomics-pipeline-engineer) for the layer answering 'which workflow engine, reference, and compute strategy, and how do we build a reproducible, validated genomics pipeline?': engine choice (Nextflow/nf-core, Snakemake, WDL+Cromwell/miniwdl, CWL), reference build (GRCh38 vs T2T-CHM13) + core steps (QC, trimming, alignment BWA-MEM2/minimap2/STAR/Salmon, dedup, variant calling GATK/DeepVariant, joint genotyping), RNA-seq (DESeq2/edgeR) and single-cell (Scanpy/Seurat), reproducibility (Docker/Apptainer, Conda/Bioconda, pinned versions, FAIR, provenance), HPC-vs-cloud scaling and cost, and validation vs GIAB/hap.py truth sets. skills, a knowledge bank (pipeline decision tree + 2026 workflow-patterns reference), and templates. Distinct from ml-engineering (generic MLOps/model training), clinical-trials (trial operations/regulatory), and data-platform (warehouse/BI). Requires ravenclaude-core@>=0.7.0.
Claude Code3 Skills
7Updated last week