bioinformatics plugins

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by OpenAI

General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure, clinical evidence, and public dataset discovery.

by OpenAI

Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper decision skills for high-risk assay branches.

by Shanghua Gao

1000+ scientific research tools for biology, chemistry, medicine, and data science. Access PubMed, UniProt, PubChem, TCGA, NHANES, GWAS Catalog, and hundreds more databases through a unified MCP interface. Includes specialized research skills for genomics, drug discovery, clinical analysis, protein variant interpretation, and more.

by Shanghua Gao

1000+ scientific research tools for biology, chemistry, medicine, and data science. Access PubMed, UniProt, PubChem, TCGA, NHANES, GWAS Catalog, and hundreds more databases through a unified MCP interface. Includes 120+ specialized research skills for genomics, drug discovery, clinical analysis, protein variant interpretation, and more.

by Manuel Corpas

Bioinformatics-native AI agent skill library: pharmacogenomics, clinical variant interpretation, GWAS and polygenic scores, ancestry, RNA-seq and single-cell, metagenomics, proteomics and nf-core pipeline wrappers. 97 Agent Skills, 50 with a deterministic CLI entry point and demo data, every runnable skill writing a SHA-256 reproducibility bundle. Local-first.

by BioNexus Team

Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).

by BioNexus Team

Scientific Reliability Layer & Scientific Warrant Engine for AI Agents (Warrant-First Evidence Assessment, Fail-Closed Invariants, Evidence-Capped Claims, Zero Silent Substitution).

by Dr. Alex M. Mawla, PhD

20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.

by Dr. Alex M. Mawla, PhD

20 ENCODE API tools + 47 expert skills for genomics research. Search experiments, download files with MD5 verification, run pipelines, and cross-reference 14 databases.

by Matt Corbett

Bioinformatics & genomics-pipeline team — agents (bioinformatics-workflow-architect, genomics-pipeline-engineer) for the layer answering 'which workflow engine, reference, and compute strategy, and how do we build a reproducible, validated genomics pipeline?': engine choice (Nextflow/nf-core, Snakemake, WDL+Cromwell/miniwdl, CWL), reference build (GRCh38 vs T2T-CHM13) + core steps (QC, trimming, alignment BWA-MEM2/minimap2/STAR/Salmon, dedup, variant calling GATK/DeepVariant, joint genotyping), RNA-seq (DESeq2/edgeR) and single-cell (Scanpy/Seurat), reproducibility (Docker/Apptainer, Conda/Bioconda, pinned versions, FAIR, provenance), HPC-vs-cloud scaling and cost, and validation vs GIAB/hap.py truth sets. skills, a knowledge bank (pipeline decision tree + 2026 workflow-patterns reference), and templates. Distinct from ml-engineering (generic MLOps/model training), clinical-trials (trial operations/regulatory), and data-platform (warehouse/BI). Requires ravenclaude-core@>=0.7.0.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by The Galaxy Project

Galaxy development skills: tool XML wrappers, Nextflow-to-Galaxy conversion, ToolShed revisions in usegalaxy-tools, UCSC track hubs and Galaxy Hub news posts. Mirror of galaxyproject/galaxy-skills (dev-skills/).

by The Galaxy Project

Galaxy MCP server (galaxy-mcp) plus the galaxy-connect setup skill.

by The Galaxy Project

Curated Galaxy skills for running an analysis: connecting to a Galaxy server, the MCP tool surface, dataset collections, user-defined tools, workflow reports and turning an ad-hoc history into a reusable workflow. Mirror of galaxyproject/galaxy-skills (skills/).

by OpenAI

General life-sciences research workflows with query routing, evidence synthesis, and optional parallel subagent analysis across genetics, omics, biology, chemistry, structure, clinical evidence, and public dataset discovery.

by OpenAI

Guided NGS intake, local execution, and public-pipeline routing for BCL, FASTQ, DNA variant, RNA-seq, single-cell, epigenomics, amplicon, and metagenomics analyses, with deeper decision skills for high-risk assay branches.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by K-Dense Inc.

Ready-to-use scientific and research Agent Skills for biology, chemistry, medicine, and related workflows.

by Jacob Vogan

Offline biological sequence/music conversion with reversible MIDI, WAV, and MusicXML, accessible score notation, and lossy arbitrary-audio transcription.