theoretical-biophysics-modeling-skills

v0.3.0

Reusable skills for scientific computing, biophysics modeling, figures, clarification, and agent guidance.

CodexClaude Code4 Skills

By Theoretical Biophysics Modeling Skills contributorsLicense: MIT0 GitHub starsUpdated 9 hours ago

Directory evidence

Runtimes: Codex and Claude Code
Parsed components: 4 skill or MCP entries
Source updated: Aug 31, 2026
Manifest status: Canonical path parsed

The directory validates manifest shape and source location. It does not execute the plugin or provide a security endorsement. Review the indexing methodology →

Install theoretical-biophysics-modeling-skills for Codex and Claude Code

Installs for the current user

codex plugin marketplace add IchenDEV/agent-plugin-mkt
codex plugin marketplace upgrade agent-plugin-marketplace
codex plugin add theoretical-biophysics-modeling-skills@agent-plugin-marketplace

Paste and run these commands in a terminal with Codex. They add and refresh the PluginsMP catalog, then install this plugin.

The installer fetches third-party code from the source repository shown on this page. This directory validates manifest structure and source location, but does not perform a security audit; review the manifest, components, and source before installing.

Get the source manually

$ git clone https://github.com/surajinacademia/theoretical-biophysics-modeling-skills

Clone the source repository, then follow its setup instructions to add the plugin to a compatible client. The repository root is the plugin root.

Plugin files

theoretical-biophysics-modeling-skills/

├── .codex-plugin/plugin.json
├── .claude-plugin/plugin.json
├── skills/computational-modeling/SKILL.md
├── skills/gotcha/SKILL.md
├── skills/lets-be-clear/SKILL.md
└── skills/schematic-designer/SKILL.md

Included Skills4

computational-modelingskills/computational-modeling/SKILL.md

Core workflow for implementing, modifying, debugging, validating, or reviewing code for scientific and biophysical models. Trigger this skill whenever the user asks to work on code for a scientific model. Trigger only when the chat is about both coding and modeling. Do not trigger for data analysis, statistics, plotting, or figure generation.

gotchaskills/gotcha/SKILL.md

Turn explicit agent-performance feedback into one durable rule or workflow in the applicable AGENTS.md. Trigger this skill whenever the user asks to save agent guidance in AGENTS.md, invokes `/learn`, or uses `learn` as a standalone command followed by a concrete agent-behavior lesson. Do not use for ordinary requests to learn about a subject, negated requests not to save a rule, or standards destined for another artifact.

lets-be-clearskills/lets-be-clear/SKILL.md

Restate a user's request clearly and ask for confirmation before acting. Trigger this skill whenever the user asks the agent to restate their request and wait for confirmation, invokes this skill, checks whether the agent understood them, or uses phrases such as "let's be clear," "am I clear?", "do you get me?", or a semantic equivalent. Do not trigger from ambiguity alone or from an ordinary retrieval or definition request.

schematic-designerskills/schematic-designer/SKILL.md

Generate or reconstruct scientifically faithful figures from specifications, equations, data, or image references. Trigger this skill whenever the user asks for composite publication design, a scientific schematic, image reconstruction, or an exact PDF and outlined-SVG contract. Do not use for an ordinary exploratory, diagnostic, comparative, or single scientific data plot; use a direct data-analysis and plotting workflow.

Plugin manifests2

.codex-plugin/plugin.json

{
  "name": "theoretical-biophysics-modeling-skills",
  "version": "0.3.0",
  "description": "Reusable skills for scientific computing, biophysics modeling, figures, clarification, and agent guidance.",
  "author": {
    "name": "Theoretical Biophysics Modeling Skills contributors"
  },
  "license": "MIT",
  "keywords": [
    "theoretical-biophysics",
    "biophysical-modeling",
    "scientific-computing",
    "scientific-figures",
    "request-clarification",
    "agent-guidance"
  ],
  "skills": "./skills/",
  "interface": {
    "displayName": "Theoretical Biophysics Modeling Skills",
    "shortDescription": "Scientific computing, figures, clarification, and guidance",
    "longDescription": "Four independently triggered skills for scientific computing, scientific figure design, confirmed request restatement, and durable repository agent guidance.",
    "developerName": "Theoretical Biophysics Modeling Skills contributors",
    "category": "Productivity",
    "capabilities": [
      "Scientific computing",
      "Scientific figure design",
      "Request clarification",
      "Agent guidance"
    ],
    "defaultPrompt": [
      "Answer the exact scientific question with the smallest correct, readable, reproducible change.",
      "Design a scientifically accurate vector figure.",
      "Restate my request and wait for confirmation.",
      "Save this feedback as one durable repository rule."
    ]
  }
}

.claude-plugin/plugin.json

{
  "name": "theoretical-biophysics-modeling-skills",
  "description": "Reusable skills for scientific computing, biophysics modeling, figures, clarification, and agent guidance.",
  "version": "0.3.0",
  "author": {
    "name": "Theoretical Biophysics Modeling Skills contributors"
  },
  "repository": "https://github.com/surajinacademia/theoretical-biophysics-modeling-skills",
  "license": "MIT"
}

For maintainers

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[theoretical-biophysics-modeling-skills on Agent Plugins Marketplace](https://pluginsmp.com/plugins/theoretical-biophysics-modeling-skills)