neuromechanist

by Seyed Yahya Shirazi

Publication-quality figures plugin. Eight skills + one QA agent. figure-bible: scaffolds and validates the per-project theme.json (palette, typography, text limits, Codex model settings) that every other skill reads. ai-full-figure: gpt-image-2 through the Codex CLI (or the OpenAI Images API) renders single panels or whole multi-panel figures with large verbatim titles and panel letters, panels generated in parallel with reference-image consistency, composed at journal width; a text ladder routes dense labels to the SVG overlay and numerals to plot or vector skills. transparent-icons: flat scientific icons with native alpha through the same shared backend, with an explicit Atlas Cloud path. scientific-figure: svgutils composer with pre-export font-size validation and Inkscape/cairosvg export. svg-primitives: mm-precise SVG builder with auto-fit text, edge-snapped arrows, and layer ordering; svg-figure: hand-authoring conventions and editor handoff. plot-styling: library decision tree with SciencePlots recipes. figure-qa agent: type-dispatching QA with OCR of expected strings, palette compliance against the theme, geometry and font checks, a VLM rubric, and a JSON verdict that drives the generate, QA, fix loop.

by Seyed Yahya Shirazi

Complete grant proposal toolkit: NIH/NSF and SBIR/STTR proposal writing, merit and readability review, and figure quality assurance

by Seyed Yahya Shirazi

Academic manuscript toolkit: literature review (multi-phase citation-traceable + single-pass thematic), peer review, writing, journal-specific formatting with semantic-line-break safety, and humanizer pass to remove AI-writing tells

by Seyed Yahya Shirazi

Machine-learning training and benchmarking on rented cloud GPUs: prebaked RunPod images that boot in seconds instead of minutes, pod lifecycle scripts, GPU selection and pricing ladders, and the provisioning pitfall catalog

by Seyed Yahya Shirazi

Neuroscience data standards and experiment design: BIDS conversion/validation, HED annotation, and PsychoPy experiment scaffolding

by Seyed Yahya Shirazi

Academic literature search, citation management, PDF retrieval, identifier conversion, and BibTeX export

by Seyed Yahya Shirazi

Presentation builder: create interactive Reveal.js presentations from JSON using the Agentic Presentation Builder engine

by Seyed Yahya Shirazi

Complete project lifecycle toolkit: read-only startup preflight, bounded native PR review panels, tracked cross-agent project memory, initialization, cross-agent user-instruction setup, tiered model routing, epic/sprint workflow, onboarding, planning, debugging, engineering loop, agent fan-out, CI/CD, Docker, security, and document processing